MEDICAL MICROBIOLOGY AND INFECTIOUS DISEASE
University of Florida                    College of Medicine      Department of Molecular Genetics and Microbiology*
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Fall 2011

New Stuff:

MMID Exam 1 available for review - click here.  Feedback is proved with the key.  Email appeals to Drs. Condit and Bloom and cc Dr. Gulig.  Deadline for appeals is Tuesday, Oct. 25, 5:00 pm.

Official Content Corrections, Emails, and Announcements in Courses (ModCore).  You should check this page daily.  You are responsible for all material on the announcements unless indicated as optional.
Microbiology in the news - strictly for interest.

General Course Material:
Paul A. Gulig, Ph.D., Course Director (gulig@ufl.edu)
Course Syllabus
Course Evaluation
Old Examinations

Schedule:  Virology     Bacteriology 1     Bacteriology 2   Mycology/Parasitology

Date

Time

Lecture

Faculty

PDF

PPT

 Reading* Mandatory Assignments Suggested Assignments

9/19

 11:00 Introduction to MMID Gulig  

X

      
  1:00 Intro I: virus structure and classification Condit X X S1, S31

None of the BUGS cases are mandatory for virology.

Introductory BUGS Cases:
Annie Brown,

Transplant Disaster

9/20

 1:00 Intro II: laboratory virology Condit X X S31

9/21

 11:00 Intro III: pathogenesis & genetics Condit X X S31
  1:00 DNA viruses I: papillomaviruses Condit X X S40

9/22

 11:00 DNA viruses II: adeno, parvo and polyomaviruses Condit X X S39
  1:00

(-) RNA viruses I: influenza virus

Condit X X S36

9/23

 11:00  (-) RNA viruses II: measles, mumps, parainfluenza and respiratory syncytial viruses

Condit

 X X S34
               

9/26

 11:00 (-) RNA viruses III: rhabdovirus (rabies) and reoviruses (rotavirus, diarrhea) Condit X X S35, S37

 

Joe Gasper (see also cme.ufl.edu/media/flu/)

Coughing Baby too;

Mama Doc;

Snappy Mexican;

Day Care Diarrhea

9/27

 11:00

(+) RNA viruses I: enteroviruses, rhinoviruses

 Bloom X X S32, S37

9/28

 No MMID
9/29   No MMID        

9/30

 1:00

(+) RNA viruses II: rubella, encephalitis

 Bloom X

X

S33, S72
                 

10/3

 1:00 Current topics I - Rabies in the U.S. Faculty        

Quoth the Raven;

Annie Brown;

Osculating Infection;


See Dick, See Jane

10/4

 11:00 (+) RNA viruses III: hepatitis Bloom

X

X

S43

 

 1:00 Viral hepatitis Nelson X X  
10/5 11:00 Viral diarrhea Forsmark   X X  
  1:00 Reverse transcribing viruses I: hepatitis B Bloom X X S43

10/6

 11:00 Reverse transcribing viruses II: HIV Bloom X X S38
  1:00 AIDS Duff X X Correct files for 2011

10/7

 11:00 Current topics II - Eradication of Polio Faculty  
1:00 DNA viruses III: herpes Bloom X X S41, S42
  2:00 Herpes infections Gupte X X  

10/10

 10:00 Congenital infections Duff X X    
  11:00 Infection control and bioterrorism Bloom X X S44, S45, S57
 10/11

 

 10:00 Emerging infections Bloom X X S57, S73
  11:00 Current topics III - Status of HIV vaccine development Faculty      

10/12

   No MMID        

1:00

 Review Bloom, Condit X X

10/14

 11:00 Exam 1            
               
10/17

10:00

Introduction to Bacteriology

Gulig

 X

 X

S3
Clicker Qs		 **Breathing Problem**;
Farmer Brown

Antimicrobial Warmup due Oct. 24.

  

 

11:00

Bacteriology - Structure

Gulig

 "

 "

 "

 

1:00

Bacterial Physiology

Gulig

 "

 "

 "
10/18   No MMID        
10/19

 

No MMID

        
10/20

11:00

Bacterial Genetics

Gulig

X

X

 "
  1:00

Antimicrobial Therapy

 Gulig " " S5, S30, I-1
10/21 2:00

Bacterial Classification

Girón

X

 

  
  3:00 Diagnosis Giron "   S10

 

 

              
10/24

11:00

Bacterial Genetics, Antibiotic Resistance

Gulig

 "

 "

   Antimicrobial Warmup due Oct. 24.

Virtual Microbiology Lab (complete before October 31, 11:59 pm)

You should use the Streptococcus pyogenes web page as a self-teaching tool in conjunction with the Schaecter and other relevant lectures.  See also an online supplemental text document.

Intro. to Upper Respiratory Tract Infections;


Sad Sore Throat;

Coughing Baby;

Coughing Baby Too (review)
10/25

10:00

Bacterial Pathogenesis 1
Pathogenesis Web Page

Gulig

X

X

 S1,S2,S8, S9, S59

 

11:00

Clinical aspects of antibiotics and resistance
Antibiotic summary table (commentable)

Southwick

X

 

 I-1
Project Flexner links
  2:00

Bacterial Pathogenesis 2

Gulig

X

X

 S6,S7 Review Immunology 
10/26  

No MMID

        
10/27

11:00

Sepsis

Ramphal

X

X

  
 

1:00

Classification and Disease

Schain

X
(revised 10/28)

X

  
10/28 1:00 Clinical Diagnosis ID Faculty
                 
10/31 2:00

URI Organisms

Giron

X

updated 10/31

 S62 Virtual Microbiology Lab (complete before October 31, 11:59 pm)

**Smoking Colonel;

Achey Amoeba**

CMC-1 Warm-up Due 11/2

Intro. to Pneumonia

Chilled Construction Worker;


Joe Gasper (review);


John Dough;

Cindy Fairis

 
 

3:00

LRT Organisms

Giron

X

updated 10/31

 S62
11/1

11:00

Pneumonia

Southwick

X

   I-p. 79-99
 

1:00

TB

Islam

X

X

 I-p. 103-119
11/2

11:00

 Review Gulig Strep

 

  
11/3 11:00

URI-Strep Infections

Vijayan

X

X

 I will bring 20 printed copies to class.
 

1:00-2:50

CMC-1 Respiratory Infections

ID faculty*

 

 

  
11/4   No MMID - Homecoming        
               

 11/7

8:00

Exam 2 (note time change)

        

**Sick Baby**

CMC-2 Warm-up Due 11/8 11:55 pm

 Introduction to Endocarditis,

Tired Phage Therapist

Introduction to Brain and Meningeal Infections (CNS),

Stillborn Twin

Intro. to Gastrointestinal Dis.,

Pasteur-ized Chef,

Caesar Salad's Revenge,

Day Care Diarrhea (review)

11/8

11:00

Otitis, Sinusitis, Meningitis Organisms

Gulig

X

X

 S12,S13,S14, S61, S68
 

 

1:00

Endocarditis

Wang

X

X

 updated 11/7 6:30 pm
11/9 11:00

Enteric Organisms and Infections 1

Girón

X

   S73, S25, S26, S28, S57
  1:00 Meningitis Southwick X X I-6
11/10 11:00

Enteric Organisms and Infections 2

Girón

 X

X (B/W)

 S76, S11, S16, S17, S20
 

1:00

CMC-2 CNS Infections

ID faculty*

 

 

  
11/11

 

 Veteran's Day  

 

 

  

 

 

 

 

 

 

      
11/14

11:00

Otitis and Sinusitis Infections

Antonelli

 X

X

 updated 11/13 10:00 pm
 CMC-3 Warm-up Due 11/14

CMC-4 Warm-up Due 11/17

**Joe Gloveless**

**Great Boar Hunter**

**Introduction to Skin Infections**,

**Weak Weight Lifter**

**Thorny Problem**,

**Oiled Umbilicus**

 Intro. to Zoonotic Diseases,

Bull's Eye,

Spotted Palms,

Snake Hunter,

Dumpster Kitty

11/15

11:00

Enteric Organisms and Infections 3

 Girón

X
upated 11/14

 X
black/white for print		 Salmonella web page
Vibrio cholerae web learning

 

1:00

 CMC-3 Endocarditis

ID faculty*

 

 

 I-6

 11/16

11:00

Enteric infections

 Forsmark

X

X

  
11/17 11:00

Zoonoses

 Gulig X X Lyme disease web page

**Leptospira outline**

Yersinia self study exercise

11/18

11:00

Skin Pathogens

Gulig

X

X

 updated 11/17 9:00 pm

 

1:00

CMC-4 GI Infections

ID faculty*

 

 

  

 

 

 

 

 

 

      
11/21   No MMID         CMC-5 Warm-up Due 11/28 Introduction to Genital and Urinary Tract Infections,

Suspicious Spots,

Leaky Faucet,

Pain in the Side,

See Dick, See Jane (review)

11/22

10:00

Vaginosis, vaginitis

Poff

X (pdf)

Handout pdf

X (ppt)

 These are the files he used in lecture - updated 11/29 7:30 am

11/23

10:30

STD Infections

Duff

X

X

  
11/24   Thanksgiving        

11/25

   Thanksgiving        

 

 

 

 

 

 

      
11/28 11:00 UTI Schain

X

 X (updated 11/28 9:30 pm after her lecture) CMC-5 Warm-up Due 11/28  
11/29 1:00 CMC-5 GU Infections ID faculty*      
11/30 10:00

Review (Q&A) C1-15

Gulig

      
12/1

3:00

Exam 3

        

12/2

 1:00 Basic Mycology

Lewin

X

X

 S46-50
               

12/5

11:00

Clinical Mycology

Wingard

X

 X

   Mycology Cases: **Round Rash**;
**Bats in the Belfry**;

Parasitology Cases:  **Kiss of Death**; **Pharaoh's Revenge**;

Self study:
Trypanosomoma brucei and Trichinella spiralis (CDC - check life cycle and clinical features)
Parasitology Images
Zygomyces (Rhizopus - check disease and diagnosis)		 Here Pretty Pigeon

Windy Professor,

Pain in the Galapagos;

Feverish Seaman;

Blocked Bowel;

Pain in the Missionary;

Ants in the Pants?;

Whipped!

 

1:00

ID Patient Discussion

Duff

      

12/6

1:00

 Basic Parasitology 1 Gulig X X  

12/7

1:00

 Basic Parasitology 2 Gulig " " Bed Bugs
(self-study)

12/8

1:00

 Clinical Parasitology 1 Archibald

X

X

 

12/9

1:00

 Clinical Parasitology 2 Archibald X X Parasite, Fungus, & Drug List
                 

 12/12

4:00

Review (Q&A)

Gulig

 

 

      

12/15

9:00

Exam 4

 

 

 

      

 12/16

7:30

Final Exam - NMBE

 

 

 

      

*Reading: S=Schaecter, I=Infectious Disease- A Short Course, # refers to chapter

Assignments:

1.  BUGS Cases - Complete these exercises during the suggested time frame in the schedule above.  Cases that are labeled with ** have unique material that is covered on exams.  None of the cases for virology are assigned.  Note that we take note of material that is reinforced in the BUGS and lecture, even if the case is not assigned.

2.  Current Topics in Microbiology (CTIM)
       CTIM Group Assignments (Dr. Gulig's Roster page)
       CTIM Room Assignments
        CTIM Materials:
            CTIM 1 - Rabies in the U.S. (Oct. 3, 1:00)
            CTIM 2 - Eradication of polio (Oct. 7, 11:00)
            CTIM 3 - Status of HIV vaccine development (Oct. 11, 11:00)

3.  Virtual Microbiology Lab - Due Oct. 31, 11:59 p.m. - (After the exercise closes, it will be converted to review mode and you will be able to view your responses and the key.)- We lost our wet lab years ago.  The Virtual Microbiology Lab enables you to go through exactly the same decision making process, data evaluation, and diagnostics as our former wet lab.  You will need to know this information for our exams and exams administered by "other people".  You must complete the lab by the deadline - part of the physician scholar competency evaluation.  Work in groups if you want, submit individually.

3.  Clinical Microbiology Conferences (CMC) - ** CMC1 NOW UPDATED FOR 2011 ** You have been assigned groups.  Look over the Pre-CMC material and read the appropriate material from Infectious Disease in 30 Days.  Your faculty leader may assign students to present cases or answer specific questions.  This material is covered on our exams.

Introduction

CMC Group Assignments

CMC Room Assignments

CMC Key Facts Wish List
CMC Materials and Assignments
CMC CMC 1 - Pneumonias (Nov. 3, 1:00-2:50)
CMC 2 - CNS Infections (Nov. 10, 1:00) Warm-up due 11/8, 11:55 pm
CMC 3 - Endocarditis (Nov. 15, 1:00) Warm-up due 11/14, 5:00 pm
CMC 4 - GI Infections (Nov. 18, 1:00 Warm-up due 11/17, 5:00 pm
CMC 5 - GU Infections(Nov. 29, 1:00) Warm-up due 11/28, 5:00

Supplemental Material:
Medisite lecture videos

Virology:
Condit Online Lectures
 Virology Chapter
On Warts
Measles 2008 Graph
 "Kath"

Bacteriology Exam 1:
TB Revealed - Dr. Gulig's take on TB
More F plasmid stuff than you really wanted to know, but were afraid to ask!
Streptococcus pyogenes supplement
Figure showing antibiotics that act at peptidoglycan and their resistances
Antibiotic summary table
Phadebact figure

Bacteriology Exam 2:
Summary chart of enteric bacterial infections
 Salmonella movie
 E. coli movie
Really neat animations on intracellular pathogens
Yersinia self study exercise (see relevant parts of Schaecter - Chapters 9, 17, 57, 62, 73, 76)
Dr. Poff's PowerPoint Pictures
FDA Bad Bug Book - This is an excellent resource for foodborne pathogens.

Parasitology:
Parasite-Fungus-Drug list
 Guide to parasitology images
 CDC parasitology home page
 Links to CDC pages relevant for MMID - great life cycles

Useful Microbiology Sites:
Online Medical Dictionary
Emedicine.com - Dr. Gulig's favorite site for getting clinically relevant material
The "Bad Bug" Book from the FDA - excellent resource for foodborne pathogens
CDC
Emerging Infectious Diseases Journal - published by the CDC

Contact Webmaster         Last revised: September 22, 2010

*Department of Molecular Genetics and Microbiology, PO Box 100266, University of Florida College of Medicine, Gainesville, FL 32610-0266; 352-392-3132